Sulfolobus sulfotaricus cluster D 142 proteins Distance Location Strand Length PID Gene Synonym Code COG Product -22 276282..277514 + 410 13813470 NuoD SSO0324 C COG0649 NADH dehydrogenase subunit D (NuoD) -22 2096761..2097717 + 318 13815590 - SSO2287 I COG1607 Probable acyl-coenzyme a thioester hydrolase -19 392359..392811 - 150 13813610 - SSO0454 K COG2390 Hypothetical protein -19 1247084..1248040 + 318 13814621 - SSO1399 S COG1857 Conserved hypothetical protein -19 1983860..1984561 + 233 13815454 - SSO2157 R COG0561 Conserved hypothetical protein -16 948084..949358 - 424 13814284 - SSO1093 J COG1530 Conserved hypothetical protein -16 2388719..2389468 - 249 13815932 paaF-6 SSO2623 I COG1024 Enoyl CoA hydratase (paaF-6) -16 2931358..2932581 - 407 13816619 - SSO3184 E COG0531 Conserved hypothetical protein -15 1248817..1249788 + 323 13814623 - SSO1401 - - Hypothetical protein -13 313213..313614 - 133 13813515 trxA-1 SSO0368 O COG0526 Thioredoxin (trxA-1) -13 408999..410456 + 485 13813632 - SSO0475 S COG3372 Conserved hypothetical protein -13 843169..844869 - 566 13814172 - SSO0987 G COG0297 Glycogen synthase -13 1993637..1994308 - 223 13815467 - SSO2169 S COG3253 Conserved hypothetical protein -13 2149856..2150650 + 264 13815659 nagD-like SSO2355 G COG0647 "Phosphatase, putative (nagD-like)" -12 90305..90655 + 116 13813243 - SSO0111 - - Hypothetical protein -10 1370641..1370931 - 96 13814747 - SSO8276 L COG3335 Conserved hypothetical protein -7 17801..19660 + 619 13813148 - SSO0018 C COG1145 Hypothetical protein -7 131917..132345 + 142 13813288 - SSO0157 K COG1522 Transcriptional regulator -7 356770..357768 + 332 13813561 metE-2 SSO0407 E COG0620 5-methyltetrahydropteroyltriglutamate- homocysteine methyltransferase (metE-2) -7 443596..444333 - 245 13813672 - SSO0512 - - First ORF in transposon ISC1217 -7 546572..547924 + 450 13813800 purF-1 SSO0632 F COG0034 Amidophosphoribosyltransferase (glutamine phosphoribosylpyrophosphate amidotransferase) (ATase) (GPAT) (purF-1) -7 1364918..1366330 - 470 13814742 - SSO1512 - - Hypothetical protein -3 2088..2969 + 293 13813131 rbsK-1 SSO0004 G COG0524 Ribokinase (rbsK-1) -3 47785..48516 + 243 13813189 - SSO0055 - - Hypothetical protein -3 54626..55480 - 284 13813198 - SSO0066 R COG1355 Conserved hypothetical protein -3 56786..57235 - 149 13813202 rpl13AB SSO0069 J COG0102 LSU ribosomal protein L13AB (rpl13AB) -3 81106..82512 + 468 13813231 pheS SSO0100 J COG0016 Phenylalanyl-tRNA synthetase alpha subunit (pheS) -3 98567..100018 - 483 13813254 gspE-1 SSO0120 N COG0630 "Type II secretion system protein, virB homolog (gspE-1)" -3 105256..106164 - 302 13813259 ubiA-1 SSO0125 H COG0382 4-hydroxybenzoate octaprenyltransferase (ubiA-1) -3 189049..189375 - 108 13813359 rpl30E SSO0221 J COG1911 LSU ribosomal protein L30E (rpl30E) -3 202755..203297 + 180 13813374 - SSO0234 R COG0491 Hypothetical protein -3 264045..264707 + 220 13813454 aroD SSO0311 E COG0710 "3-dehydroquinate dehydratase, putative (aroD)" -3 308410..309468 + 352 13813508 pepQ SSO0363 E COG0006 Prolidase (Xaa-Pro dipeptidase) (pepQ) -3 362362..363606 - 414 13813572 - SSO0417 G COG3635 Phosphonopyruvate decarboxylase -3 373055..374035 + 326 13813583 - SSO0429 - - Hypothetical protein -3 388033..389013 + 326 13813605 hisC-like SSO0448 E COG0079 "Histidinol-phosphate aminotransferase, putative (hisC-like)" -3 425555..426217 + 220 13813653 - SSO0494 S COG1801 Conserved hypothetical protein -3 455268..455459 + 63 13813688 - SSO6050 - - Second ORF in a partial transposon ISC1439 -3 473189..474277 - 362 13813706 - SSO0543 - - Hypothetical protein -3 543785..544459 + 224 13813798 purQ SSO0628 F COG0047 Phosphoribosylformylglycinamidine synthase I (FGAM synthase I) (purQ) -3 555969..559124 + 1051 13813810 carB SSO0641 E COG0458 Carbamoyl-phosphate synthase large subunit (carB) -3 577862..578560 - 232 13813840 - SSO0673 Q COG0500 Hypothetical protein -3 711881..712834 - 317 13814012 rfbB-1 SSO0830 M COG1088 "dTDP-Glucose 4,6-dehydratase (rfbB-1)" -3 828181..829350 + 389 13814154 top6A SSO0969 L COG1697 DNA topoisomerase VI subunit A (top6A) -3 858177..859004 + 275 13814186 - SSO1000 G COG1175 Maltose transport inner membrane protein -3 942577..943503 - 308 13814278 - SSO1087 S COG2419 Conserved hypothetical protein -3 1320555..1320905 + 116 13814690 - SSO1461 - - Hypothetical protein -3 1341520..1341696 + 58 13814713 - SSO8194 - - Second part of one of two inversely orientated ORFs in ISC1043 -3 1614044..1614982 - 312 13815028 rfbB-3 SSO1781 M COG1088 "dTDP-Glucose 4,6-dehydratase (rfbB-3)" -3 1992750..1993250 + 166 13815466 - SSO2167 L COG0494 Conserved hypothetical protein -3 2011770..2012114 + 114 13815485 - SSO2187 H COG2154 "Pterin-4-alpha-carbinolamine dehydratase, putative" -3 2063403..2065997 - 864 13815552 - SSO2249 L COG0419 Purine NTPase -3 2142445..2142906 - 153 13815647 asnC SSO2347 K COG1522 "Transcriptional regulatory protein, AsnC family (asnC)" -3 2170481..2171119 + 212 13815687 rnhB SSO2384 L COG0164 Ribonuclease HII (rnhB) -3 2177035..2178315 - 426 13815694 icaA SSO2389 M COG1215 "Glucosaminyltransferase, intercellular adhesion protein A homolog, putative (icaA)" -3 2209901..2210416 - 171 13815737 cutC-1 SSO2433 C COG2080 "Carbon monoxide dehydrogenase, small chain (cutC-1)" -3 2581293..2581580 + 95 13816173 zfx-like2 SSO11231 C COG2440 Ferredoxin like protein (zfx-like2) -3 2595288..2595671 + 127 13816189 - SSO2833 - - Conserved hypothetical protein -3 2678727..2680679 - 650 13816307 hyuA-3 SSO2936 E COG0145 N-methylhydantoinase A (hyuA-3) -3 2838796..2839158 - 120 13816500 - SSO3084 R COG2044 Conserved hypothetical protein -3 2863231..2864388 - 385 13816534 acaB-10 SSO3113 I COG0183 Acetyl-CoA c-acetyltransferase (acetoacetyl-CoA thiolase) (acaB-10) 0 529769..530119 - 116 13813773 - SSO0605 K COG1594 "Zn finger protein, hypothetical" 0 585724..587703 - 659 13813851 - SSO0683 E COG0067 Conserved hypothetical protein 0 839386..840744 - 452 13814166 pyK SSO0981 G COG0469 Pyruvate kinase (pyK) 0 1536092..1536595 - 167 13814931 - SSO1683 - - Hypothetical protein 0 1554739..1555338 - 199 13814957 - SSO1709 - - Hypothetical protein 0 1624333..1624932 + 199 13815041 - SSO1790 - - Hypothetical protein 1 208923..209972 + 349 13813381 - SSO0241 R COG1759 Conserved hypothetical protein 1 395505..396395 - 296 13813617 mrp SSO0460 D COG0489 "MRP protein homolog, conserved ATPase (mrp)" 1 418707..419693 + 328 13813644 - SSO0486 P COG0609 "Iron (III) ABC transporter, permease protein (HEMU 1)" 1 1061851..1062744 + 297 13814422 - SSO1222 - - Conserved hypothetical protein 1 1831629..1832441 - 270 13815296 paaF-4 SSO2017 I COG1024 Enoyl CoA hydratase (paaF-4) 1 2240677..2241174 - 165 13815772 leuD SSO2470 E COG0066 "3-isopropylmalate dehydratase, small subunit (isopropylmalate isomerase) (alpha IPM isomerase) (IPMI) (leuD)" 1 2663867..2664172 + 101 13816285 - SSO2913 - - Hypothetical protein 2 202018..202758 + 246 13813373 - SSO0233 F COG0503 Conserved hypothetical protein 2 258056..259051 + 331 13813448 aroG SSO0304 E COG2876 Phospho-2-dehydro-3-deoxyheptonate aldolase /chorismate mutase (aroG) 2 272169..272882 + 237 13813463 - SSO0318 - - Hypothetical protein 2 518925..519524 - 199 13813758 - SSO0591 - - Hypothetical protein 2 712831..713865 - 344 13814013 - SSO0831 M COG1209 Sugar phosphate nucleotydyl transferase 4 361016..361558 + 180 13813567 rpoE1 SSO0415 K COG1095 "DNA-directed RNA polymerase, subunit E' (rpoE1)" 4 761575..762321 + 248 13814074 trpC SSO0895 E COG0134 Indole-3-glycerol phosphate synthase (trpC) 4 1045601..1046758 - 385 13814403 porA-1 SSO1207 C COG0674 Pyruvate synthase alpha chain (Pyruvic-ferredoxin oxidoreductase alpha chain) (porA-1) 4 2960332..2962644 - 770 13816655 - SSO3214 R COG1444 Conserved hypothetical protein 5 348688..349437 + 249 13813549 pcnA-like SSO0397 L COG0592 Proliferating cell nuclear antigen putative homolog (PCNA-like) (pcnA-like) 5 955002..956138 + 378 13814293 - SSO1103 G COG0477 Transport membrane protein (permease) 5 2266770..2267669 - 299 13815800 acd-like2 SSO2497 I COG1960 Acyl-CoA dehydrogenase related protein (acd-like2) 6 495893..496477 + 194 13813729 atpE SSO0561 C COG1390 ATP synthase subunit E (atpE) 6 772004..774010 + 668 13814089 topA SSO0907 L COG0550 DNA topoisomerase I family A (topA) 8 605928..606647 - 239 13813876 rps4E SSO0705 J COG1471 SSU ribosomal protein S4E (rps4E) 8 624699..624920 - 73 13813902 rpl37AE SSO6418 J COG1997 LSU ribosomal protein L37AE (rpl37AE) 8 2142903..2143901 - 332 13815648 - SSO2348 C COG0644 "Geranylgeranyl hydrogenase, putative" 9 863102..864232 + 376 13814193 argE-2 SSO1007 E COG0624 Acetylornithine deacetylase (argE-2) 9 1996402..1997316 + 304 13815470 nadE SSO2172 H COG0171 NH(3+) dependent NAD(+) synthetase (nadE) 9 2190206..2190841 - 211 13815712 - SSO2406 R COG2220 Conserved hypothetical protein 9 2982208..2984340 + 710 13816683 cutA-8 SSO3239 C COG1529 "Carbon monoxide dehydrogenase, large chain (cutA-8)" 10 199932..200582 + 216 13813371 upP SSO0231 F COG0035 Uracil phosphoribosyltransferase (upP) 10 249129..249473 - 114 13813434 rpoM-1 SSO0291 K COG1594 "DNA-directed RNA polymerase, subunit M (rpoM-1)" 10 291003..291644 - 213 13813483 - SSO0340 S COG2454 Conserved hypothetical protein 10 617804..618391 - 195 13813893 - SSO0724 S COG2457 Hypothetical protein 10 660623..660952 - 109 13813951 - SSO0775 - - Hypothetical protein 10 2313547..2313840 - 97 13815846 - SSO10604 - - Partial transposase ISC1058 10 2941689..2942630 - 313 13816632 - SSO3195 G COG0524 Fructokinase 10 2972253..2973071 - 272 13816669 - SSO3226 G COG1830 Conserved hypothetical protein 12 316920..317429 + 169 13813519 - SSO0372 R COG0663 Ferripyochelin binding protein 12 1998933..1999832 + 299 13815473 - SSO2175 S COG2431 Conserved hypothetical protein 12 2411865..2412356 - 163 13815966 - SSO2652 K COG1522 Transcriptional regulatory protein (Lrp/AsnC family) 12 2971123..2972241 - 372 13816668 - SSO3225 - - Conserved hypothetical protein 13 616781..617791 - 336 13813892 leuB SSO0723 E COG0473 3-isopropylmalate dehydrogenase (leuB) 13 2029637..2030356 + 239 13815504 fabG-4 SSO2205 Q COG1028 3-oxoacyl-(acyl carrier protein) reductase (fabG-4) 13 2089224..2090636 - 470 13815581 cysS SSO2280 J COG0215 Cysteinyl-tRNA synthetase (cysS) 13 2394008..2395165 + 385 13815940 - SSO2629 R COG0446 Oxidoreductase (flavoprotein) 13 2918395..2918769 + 124 13816602 - SSO3170 S COG1720 VirR related conserved hypothetical protein 14 598477..598743 - 88 13813862 rpl34E SSO6374 J COG2174 LSU ribosomal protein L34E (rpl34E) 14 652597..653070 + 157 13813941 - SSO0767 R COG1881 Conserved hypothetical protein 15 1381020..1381553 + 177 13814763 pdhC SSO1530 C COG0508 "Dihydrolipoamide S-acetyltransferase, carboxy-end (pdhC)" 15 2361442..2362596 - 384 13815902 agxT SSO2597 E COG0075 Serine-pyruvate aminotransferase (agxT) 17 2140629..2141474 + 281 13815645 gdS-2 SSO2345 H COG0142 "Geranylgeranyl pyrophosphate synthetase, putative (gdS-2)" 18 85752..86957 + 401 13813237 aspB-1 SSO0104 K COG1167 Aspartate aminotransferase (aspB-1) 18 1553115..1553609 + 164 13814954 - SSO1705 L COG3415 First ORF in transposon ISC1048 18 1626062..1626556 - 164 13815044 - SSO1794 L COG3415 First ORF in transposon ISC1048 18 1683320..1683934 + 204 13815122 - SSO1868 R COG3413 Conserved hypothetical protein 18 2675378..2675872 + 164 13816303 - SSO2930 L COG3415 First ORF in transposon ISC1048 19 169763..170626 + 287 13813333 - SSO0197 T COG0478 Conserved hypothetical protein 19 478181..479362 + 393 13813712 - SSO0548 G COG0477 Multidrug resistance related protein 19 2731824..2732801 - 325 13816376 - SSO2989 I COG3407 "Diphosphomevalonate decarboxylase, putative" 21 59335..59832 - 165 13813207 rps13AB SSO0074 J COG0099 SSU ribosomal protein S13AB (rps13AB) 21 500453..500761 + 102 13813734 atpK SSO0567 C COG0636 ATP synthase subunit K (atpK) 23 328136..329296 - 386 13813531 thrS-like SSO0384 J COG0441 Threonyl-tRNA synthetase homolog (thrS-like) 23 416056..416394 + 112 13813640 - SSO0482 - - Conserved hypothetical protein 23 1194295..1194774 + 159 13814569 - SSO1356 - - Hypothetical protein 23 1430039..1430932 + 297 13814814 - SSO1583 - - Conserved hypothetical protein 23 1697284..1697487 - 67 13815141 - SSO9134 L COG2452 Partial ORF from ISC1778 23 2497535..2498728 + 397 13816072 - SSO2743 S COG1602 Conserved hypothetical protein 24 1771849..1772328 + 159 13815228 - SSO1953 - - Hypothetical protein 24 2626555..2627742 - 395 13816235 acaB-9 SSO2874 I COG0183 Acetyl-CoA c-acetyltransferase (acetoacetyl-CoA thiolase) (acaB-9) 25 833436..834233 + 265 13814159 fabG-1 SSO0975 Q COG1028 3-oxoacyl-(acyl carrier protein) reductase (fabG-1) 25 1044350..1044694 + 114 13814401 - SSO1204 - - Hypothetical protein 25 1159034..1160713 - 559 13814535 - SSO1328 L COG1401 Restriction endonuclease related protein 25 2034192..2035244 + 350 13815512 - SSO2211 R COG0535 Conserved hypothetical protein 25 2096394..2096783 + 129 13815589 - SSO2286 - - Hypothetical protein 25 2356224..2356652 + 142 13815892 - SSO2588 R COG0517 Hypothetical protein 25 2952434..2952814 + 126 13816645 - SSO3206 J COG0251 "Protein synthesis inhibitor, putative"