CS 9633

CS 6990

Course Syllabus	Syllabus for CS 6990 for Fall 2003
Course Schedule	Schedule of class assignments and presentations (updated periodically)
Academic Honesty	The Computer Science Departmental Policy Regarding Professional Conduct (academic honesty; required reading for all students)
Add/Drop Policy	The Mississippi State University Add/Drop Policy
Textbooks	Bioinformatics: Sequence and Genome Analysis by David W. Mount Beginning Perl for Bioinformatics by James Tisdall
Useful links	Citeseer NCBI: National Center for Biotechnology Information EBI: European Bioinformatics Institute EMBL: European Molecular Biology Laboratory NCBI ORF Finder GeneCards at DKFZ Kyoto Encyclopedia of Genes and Genomes ExPASy Molecular Biology Server Citeseer Forsdyke Laboratory Bioinformatics Max Planck Institute for Molecular Genetics On-Line Lectures
Powerpoint slides with illustrations	Introduction Global Sequence Alignment Example Sequence Alignment Examples Introduction to Phylogenetic Systematics by Dr. Mark Fishbein BLAST Sequence Alignment Statistics Steven Salzberg's Notes on Markov Models Lecture 1 Lecture 2 Figures 3 and 4 Figures 5 Figures 6
Homework Sets	Homework 1 Due August 27, 2003 Homework 2 Due September 10, 2003 Homework 3 Due September 22, 2003 Homework 4 Due October 1, 2003 Homework 5 Due October 8, 2003 Practice Perl Exam 3
Term Project	IEEE template Project Descriptions Due December 3, 2003