Yang, Xiaoyong, Ruiyi Wu, Zi´ang Ding, Wei Chen, and Song Zhang, A Comparative Analysis of Dimension Reduction Techniques for Representing DTI Fibers as 2D/3D Points, In New Developments in the Visualization and Processing of Tensor Fields, Springer-Verlag, 2012.
Jankun-Kelly T.J., Song Zhang, A.C. Callan-Jones, Robert A. Pelcovits, V.A. Slavin, and David H. Laidlaw, Tensors Visualization and Defect Detection for Nematic Liquid Crystals using Shape Characteristics, In Visualization and Image Processing of Tensor Fields: Advances and Perspectives, Springer-Verlag, 2009. (pdf)
Vilanova, A., Song Zhang, G. Kindlmann, and
David H. Laidlaw. An Introduction to Visualization
of Diffusion Tensor Imaging and its Applications. In
Visualization and Image Processing of Tensor Fields. Springer-Verlag, 2005.(pdf)
Zhang, Song, Gordon Kindlmann, and
David H. Laidlaw. Diffusion Tensor MRI
Visualization. In Visualization Handbook.
Academic Press, June 2004. (pdf)
Journal Publications (20)
Wu, Keqin
and Song Zhang. A Contour Tree Based
Visualization for Exploring Data with Uncertainty, International Journal for Uncertainty
Quantification, 3 (3):203–223, 2013. (pdf)
Sanyal, J., S.
Zhang, Jamie Dyer, Andrew Mercer, P. Amburn, and R.
Moorhead, Noodles: A Tool for
Visualization of Numerical Weather Model Ensemble Uncertainty. IEEE Transactions on
Visualization and Computer Graphics, 16(6):1421-1430, 2010. (pdf)
Zhang, Song, J. Allen Crow, Xiaoyong
Yang, Joseph Chen, Ali Borazjani, Katie B
Mullins, Wei Chen, Robert C Cooper, Ronald M McLaughlin, and Jun
Liao, The
Correlation of 3D DT-MRI Fiber Disruption with Structural and Mechanical
Degeneration in Porcine Myocardium, Annals of Biomedical Engineering, 38(10):3084-95,
2010. (pdf)
Tate, D.F., Paul, R.H., Conley, J., Coop, K., Zhang,
S., Zhou, W., Laidlaw, D.H., Taylor, L.E., Flanigan,
T., Navia, B., Cohen, and R., Tashima,
K., Quantitative
Diffusion Tensor Imaging Tractography Metrics are
Associated with Cognitive Performance among HIV-infected Patients, Brain Imaging and Behavior, 4:68-79,
2010. (pdf)
Wu, K, L. Zhanping, S.
Zhang, and R. Moorhead, Topology-Aware
Evenly-Spaced Streamline Placement. IEEE Transactions on
Visualization and Computer Graphics, 16(5): 791-801, 2010. (pdf)
Sanyal, J., S.
Zhang, G. Bhattacharya, P. Amburn, and R. Moorhead, A User Study to Compare Four Uncertainty Visualization
Methods for 1D and 2D Datasets. IEEE Transactions on
Visualization and Computer Graphics, 15(6):1209-1218, 2009. (pdf)
Chen, W., Z. Ding, S. Zhang, A.M. Brandt, S. Stephen
Correia, H. Qu, J.A. Crow,
D.F. Tate, Z. Yan, and Q. Peng, A Novel Interface for Interactive Exploration of DTI
Fibers. IEEE Transactions on Visualization and Computer
Graphics, 15(6):1449-1456,
2009. (pdf)
Chen, W., Z. Yan, S. Zhang, J.A. Crow, D.S. Ebert,
R. McLaughlin, K.B. Mullins, R. Cooper, Z. Ding, and J. Liao, Volume Illustration of Muscle from Diffusion Tensor
Images. IEEE Transactions on Visualization and Computer
Graphics, 15(6):1425-1432,
2009. (pdf)
Zhang, Song, Stephen Correia, and David H. Laidlaw. Identifying White-matter
Fiber-bundles in DTI Data using an Automated Proximity-based Fiber-clustering
Method. IEEE Transactions on
Visualization and Computer Graphics, 14(5):
1044-1053, 2008, (pdf)
Correia,
Stephen, Stephanie Y. Lee, Thom Voorn, David F. Tate,
Robert H. Paul, Song Zhang, Stephen P. Salloway, Paul
F. Malloy, and David H. Laidlaw. Quantitative Tractography
Metrics of White Matter Integrity in Diffusion-tensor MRI. NeuroImage, 42(2): 568-581, 2008. (pdf)
Chen, Wei, Song Zhang, Stephen Correia, and David S. Ebert. Abstractive Representation and
Exploration of Hierarchically Clustered Diffusion Tensor Fiber Tracts. Computer
Graphics Forum, 27(3): 1071-1078, 2008. (pdf)
Paul, Robert H., David H. Laidlaw,
David F. Tate, Stephanie Lee, Karin Hoth, John Gunstad, Song Zhang, Jeffrey Lawrence, and Tim Flanigan. Neuropsychological and Neuroimaging Outcome of
HIV-Associated Progressive Multifocal Leukoencephalopathy
in the Era of Antiretroviral Therapy. Journal
of Integrative Neuroscience, 6(1):191-204, March 2007 (pdf)
Laidlaw, David H., Stephanie Y Lee, Stephen Correia, David F Tate, Robert H Paul, Song Zhang, Stephen P
Salloway, and Paul F Malloy. Quantitative TOI Metrics for White-matter Integrity
based on Diffusion Tensor MRI Data. Views Radiology,
8(4):21-23, 2007. (pdf)
Callan-Jones, A.C., Robert A. Pelcovits, Vadim Slavin, Song Zhang, David
H. Laidlaw, and George B. Loriot. Simulation and Visualization of
Topological Defects in Nematic Liquid Crystals. Physical
Review E, 74(6), December 2006 (pdf)
Simon, Jack H., Song Zhang, David H. Laidlaw,
David E. Miller, Mark Brown, John Corboy, and
Jeffrey Bennett. Identification
of Fibers at Risk for Degeneration by Diffusion Tractography
in Patients at High Risk for MS after a Clinically Isolated Syndrome. Journal
of Magnetic Resonance Imaging, 24(5): 983-988, October 2006 (pdf)
Demiralp, Cagatay, Cullen Jackson, David Karelitz, Song Zhang, and David H. Laidlaw. CAVE and Fishtank Virtual
Reality Displays: A Qualitative and Quantitative Comparison. IEEE
Transaction on Visualization and Computer Graphics, 12(3):323-330, May
2006. (pdf)
Kaufman, Jason A., Eric T. Ahrens,
David H. Laidlaw, Song Zhang, and John M. Allman. Anatomical Analysis of an Aye-aye Brain (Daubentonia Madagascariensis,
Primates: Prosimii) Combining Histology, Structural
Magnetic Resonance Imaging, and Diffusion-tensor Imaging. Anatomical
Record, 287A(1):1026-1037, November 2005. (pdf)
Zhang, Song, Mark Bastin,
David H. Laidlaw, Saurabh Sinha,
Paul A. Armitage, and Thomas S. Deisboeck. Visualization and Analysis of White Matter Structural
Asymmetry in Diffusion Tensor MR Imaging Data. Magnetic
Resonance in Medicine, 51(1):140-147, 2004. (pdf)
Wenger, Andreas, Daniel Keefe,
Song Zhang, and David H. Laidlaw. Interactive Volume Rendering of
Thin Thread Structures within Multivalued Scientific Datasets. IEEE
Transactions on Visualization and Computer Graphics, 10(6):664-672,
November/December 2004. (pdf)
Zhang, Song, Cagatay
Demiralp, and David H. Laidlaw. Visualizing Diffusion Tensor MR
Images Using Streamtubes and Streamsurfaces. IEEE
Transactions on Visualization and Computer Graphics, 9(4):454-462, October
2003. (pdf)
Chen, Wei, Song Zhang,
Stephen Correia, and David F. Tate, Visualizing
Diffusion Tensor Imaging Data with Merging Ellipsoids, In IEEE Pacific
Visualization Symposium, Beijing, China, April 2009. (pdf)
Zhang, Song, Zhicheng Yan,
Wei Chen, John Crow, Ronald McLaughlin, Robert Cooper, Xiaoyong
Yang, and Jun Liao, Muscle Fiber Visualization from
Diffusion Tensor Imaging Data, BMES, October 2009.
Wu, Keqin, Song Zhang,
Phil Amburn, and Robert J Moorhead, Using A LIC-like FlowVis Technique to Visualize Hurricanes,
In IEEE Visualization Conferences 2009
Poster Compendium, Atlantic City, NJ. (BEST POSTER AWARD)
Sanyal
J., Phil Amburn, Song Zhang, Patrick J Fitzpatrick,
and Robert J Moorhead, 3D Immersive
Visualization and Evaluation of Mesoscale Model
Outputs Simulating Hurricane Lili’s (2002) Rapid Weakening,
Ocean 2009, Biloxi, MS.
Sanyal
J., P. Amburn, S. Zhang, P. Fitzpatrick, and R.
Moorhead, Applying Immersive Visualization Techniques to Analyze Model
Outputs: a Case Study of Hurricane Lili. In Visualization 2008 poster Compendium, Columbus, Ohio,
October 2008. (BEST POSTER AWARD) (pdf)
Patel, K., Stephen Correia,
J. Foley, E. Schlicting, Song Zhang, David H.
Laidlaw, and Steven Salloway. Grey and White
Matter Changes on MRI and Diffusion-Tensor Imaging and Cognitive Function in
Mild Cognitive Impairment. In
Proceedings of International Neuropsychological Society, Waikoloa,
Hawaii, February 2008. (doc)
Sanyal,
J., P. Amburn, S. Zhang, P. Fitzpatrick, and R.
Moorhead, 3D Immersive Visualization and Evaluation of Mesoscale
Model Outputs Simulating Hurricane Lili's (2002)
Rapid Weakening. Oceans08. (pdf)
Sanyal,
J., P. Amburn, S. Zhang, J. Dyer, P. Fitzpatrick, and
R. Moorhead, User Experience of Hurricane Visualization in an Immersive 3D
Environment. In Proc. ISVC08-Lecture Notes Comp. Sci. (pdf)
Zhang, S., S. Correia, and
D.H. Laidlaw, Template-Based Automatic DTI Fiber Bundle Labeling, In Proceedings
of ISMRM, Berlin, Germany, May 2007. (pdf)
Clayden,
J., S. Zhang, S. Correia, and D.H. Laidlaw, Fine-Grained
Comparison of Anisotropy Differences Between Groups of White Matter Tracts,
In Proceedings of ISMRM, Berlin, Germany, May 2007. (pdf)
Patel, K., Stephen Correia,
J. Foley, E. Schlicting, Song Zhang,
David H. Laidlaw, and Steven Salloway. Cognitive Impairment, Hippocampal Volume, and White Matter
Integrity in CADASIL. In Proceedings of INS, 2007.
Demiralp, Cagatay, Song Zhang, David Tate, Stephen Correia, and David H. Laidlaw. Connectivity-aware
Sectional Visualization of 3D DTI Volumes using Perceptual Flat-torus Coloring
and Edge Rendering. In Proceedings of Eurographics,
2006, pp. 119-122. (pdf)
Zhang, Song and David H.
Laidlaw. Sampling DTI Integral Curves based on DWI
Forward Modeling. In
Proceedings of the IEEE International Conference of the Engineering in Medicine
and Biology Society (EMBS), New York, NY, August-September 2006.
(pdf)
Zhou, Wenjin,
Peter G. Sibley, Song Zhang, David Tate, and David H. Laidlaw. Perceptual Coloring and 2D Sketching for Segmentation of Neural
Pathways. In Siggraph 2006, Poster
Compendium (BEST POSTER AWARD), August 2006, pp. 172. (pdf)
Zhang, Song, Stephen Correia, David F. Tate, and David H. Laidlaw. Correlating DTI Fiber Clusters with
White Matter Anatomy. In ISMRM, 2006. (pdf)
Zhang, Song and David H. Laidlaw. DTI Fiber Clustering and Cross-subject
Cluster Analysis. In Proceedings of ISMRM,
Miami, FL, May 2005. (pdf)
Simon, Jack, H., Song Zhang, David H. Laidlaw,
D. E. Miller, M. Brown, J. Corboy,
D. Singel, and J. Bennett. Strategy for Detecting Neuronal Fibers at Risk for Neurodegeneration In Earliest MS
by Streamtube Tractography
at 3T. In Proceedings of ISMRM, Miami, FL, May
2005. (pdf)
Zhang, Song, Jack H. Simon,
David H. Laidlaw, Mark Brown, and David M. Miller. Visualization of the Interaction of
Multiple Sclerosis Lesions with Adjacent White Matter Fibers using Streamtubes and Streamsurfaces. In IEEE Visualization Poster Compendium, October 2004.
(pdf)
Zhang, Song and David H. Laidlaw. DTI Fiber Clustering in the Whole
Brain. In IEEE Visualization 2004
Poster Compendium, October 2004. (pdf)
Zhang, Song and David H. Laidlaw. A Model for some Subcortical DTI
Planar and Linear Anisotropy. In MICCAI 2004, September
2004. (pdf)
Zhang, Song and David H. Laidlaw. Towards a Global Tractography-based Model of FA. In Workshop
on aging connections: Advanded MRI of age related white
matter changes in the brain. ISMRM, 2004. (pdf)
Acevedo, Daniel, Song Zhang,
David H. Laidlaw, and Chris Bull. Color Rapid Prototyping for Diffusion Tensor MRI
Visualization. In MICCAI
2004 Short Papers, September 2004. (pdf)
Ahrens, Eric T., J.M.Allman, E.Bush, David H. Laidlaw, and Song Zhang. Comparative 3D Anatomy of the Prosimian
Brain:DTI and Histological
Studies. In Proceedings of the
Scientific Meeting and Exhibition of the International Society for Magnetic
Resonance in Medicine, 2004. (pdf)
Laidlaw, David H., Song Zhang, Mark Bastin,
S. Correia, Steven Salloway,
and Paul Malloy. Ramifications
of Isotropic Sampling and Acquisition Orientation on DTI Analyses. In Proceedings of the Scientific Meeting and Exhibition of the
International Society for Magnetic Resonance in Medicine, 2004. (pdf)
Slavin, Vadim, David H. Laidlaw, Song Zhang,
Robert Pelcovits, George Loriot,
and Anderw Callan-Jones. Visualization of Topological
Defects in Nematic Liquid Crystals Using Streamtubes, Streamsurfaces and Ellipsoids. In IEEE Visualization 2004
Poster Compendium, October 2004. (pdf)
Demiralp, Cagatay, David H. Laidlaw, Cullen
Jackson, Daniel Keefe, and Song Zhang. Subjective Usefulness of CAVE and
Fish Tank VR Display Systems for a Scientific Visualization Application. In IEEE Visualization Poster Compendium, Seattle, WA, 2003.
(pdf)
DaSilva, Marco, Song Zhang, Cagatay Demiralp, and David H. Laidlaw. Visualizing the Differences between
Diffusion Tensor Volume Images. In Proceedings
ISMRM Workshop in Diffusion MRI: Biophysical Issues, pages 237-238, March
2002. (pdf)
Zhang, Song and David H. Laidlaw. Ellucidating Neural Structure in Diffusion Tensor MRI Volumes
using Streamtubes and Streamsurfaces. In Proc. 9th International Society of MR in Medicine, April
2001. (pdf)
Zhang, Song, Cagatay Demiralp,
Daniel Keefe, Marco DaSilva, Benjamin D.
Greenberg, Peter J. Basser, Carlo Pierpaoli, E. A. Chiocca,
T. S. Deisboeck, and David H. Laidlaw. An Immersive Virtual Environment for DT-MRI Volume
Visualization Applications: a Case Study. In Proceedings of IEEE
Visualization 2001, pages 437-440, October 2001. (pdf)
Zhang, Song, Cagatay Demiralp,
Marco DaSilva, Daniel Keefe, David H. Laidlaw,
Benjamin D. Greenberg, Peter J. Basser,
Carlo Pierpaoli, E.A. Chiocca,
and T. S. Diesboeck. Toward Application of Virtual
Reality to Visualization of DT-MRI Volumes. In Proceedings MICCAI, October 2001. (pdf)